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@ -1,40 +1,5 @@
# CHANGELOG.md
## 2.1 (2022-09-29)
- issue#11013: non-public entries appearing as public
## 2.0 (2022-09-19) Dockerify https://redmine.ungleich.ch/issues/10884
Steps:
- Create .env.prod and .env.prod.db files
#### .env.prod
```
DEBUG=0
SECRET_KEY=secret_key_here
DJANGO_SETTINGS_MODULE=gmba_django.settings.production
ALLOWED_HOSTS=localhost,127.0.0.1,[::1]
POSTGRES_USER=user
POSTGRES_PASSWORD=password
POSTGRES_DB=app
POSTGRES_HOST=db
POSTGRES_PORT=5432
```
Building containers
- docker-compose -f docker-compose.prod.yml down -v --remove-orphans
- docker-compose -f docker-compose.prod.yml up -d --build
Copy db and adust
- docker cp gd.sql gmba_django_db_1:/gd.sql
- docker-compose exec db psql --username=psql_username_name --dbname=psql_db_name < /gd.sql
Migrate / check
- docker-compose exec web python manage.py migrate --noinput
Static resources
- docker-compose -f docker-compose.prod.yml exec web python manage.py collectstatic --no-input --clear
## 1.12 (2022-01-19)
Bugfixes:

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@ -1,85 +0,0 @@
###########
# BUILDER #
###########
# pull official base image
FROM python:3.9.6-alpine as builder
# set work directory
WORKDIR /usr/src/gmba_django
# set environment variables
ENV PYTHONDONTWRITEBYTECODE 1
ENV PYTHONUNBUFFERED 1
# install psycopg2 dependencies
RUN apk update \
&& apk add postgresql-dev gcc python3-dev musl-dev
# lint
RUN pip install --upgrade pip
RUN pip install flake8==3.9.2
COPY . .
#RUN flake8 --ignore=E501,F401 .
# install dependencies
COPY ./requirements.txt .
RUN pip wheel --no-cache-dir --no-deps --wheel-dir /usr/src/gmba_django/wheels -r requirements.txt
#########
# FINAL #
#########
# pull official base image
FROM python:3.9.6-alpine
# create directory for the app user
RUN mkdir -p /home/app
# create the app user
RUN addgroup -S app && adduser -S app -G app
# create the appropriate directories
ENV HOME=/home/app
ENV APP_HOME=/home/app/gmba_django
RUN mkdir $APP_HOME
RUN mkdir $APP_HOME/static
RUN mkdir $APP_HOME/media
#ADD gmba_django /data/app
#WORKDIR /data/app/gmba_django
# install dependencies
RUN apk update && apk add libpq
COPY --from=builder /usr/src/gmba_django/wheels /wheels
COPY --from=builder /usr/src/gmba_django/requirements.txt .
RUN pip install --no-cache /wheels/*
# copy entrypoint.prod.sh
COPY ./entrypoint.prod.sh /entrypoint.prod.sh
COPY ./init.sh /init.sh
RUN sed -i 's/\r$//g' /entrypoint.prod.sh
RUN chmod +x /entrypoint.prod.sh
# copy project
#COPY . $APP_HOME
ADD . /home/app/gmba_django
WORKDIR /home/app/gmba_django
# chown all the files to the app user
RUN chown -R app:app $APP_HOME
# change to the app user
USER app
#RUN python manage.py collectstatic --noinput
# run entrypoint.prod.sh
ENTRYPOINT ["/entrypoint.prod.sh"]
EXPOSE 8000
CMD ["gunicorn", "--bind", "[::]:8000", "--chdir", "/home/app/gmba_django", "--workers", "3", "gmba_django.wsgi:application"]

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@ -1,53 +1,8 @@
from re import A
from unicodedata import name
from django.contrib import admin
from django.utils.html import format_html
from .models import *
from django.forms import TextInput
from django.conf import settings
from django.http import HttpResponse
import csv
from django import forms
from django.contrib.admin.widgets import AutocompleteSelect
from django.contrib import messages # import messages
class autocomplete_fields_form(forms.ModelForm):
"""This form overrides autocomplete
organization field for Person class
"""
def __init__(self, *args, **kwargs):
super(autocomplete_fields_form, self).__init__(*args, **kwargs)
# self.fields['organization'].label = 'My new label'
class Meta:
model = Person
fields = '__all__'
widgets = {
'organization': forms.Select(attrs={'style': 'width:750px'})
}
def download_csv(modeladmin, request, queryset):
name = queryset[0].__class__.__name__
response = HttpResponse()
response['Content-Disposition'] = "attachment; filename="+name+"_table.csv"
first_row = []
for i in queryset[0]._meta.__dict__.get("fields"):
temp = str(i).split('.')
first_row.append(temp[-1])
writer = csv.writer(response)
writer.writerow(first_row)
for dic in queryset.values():
temp_list = (list(dic.values()))
writer.writerow(temp_list)
return response
download_csv.short_description = 'export (.csv)'
class PeopleResourceInline(admin.TabularInline):
@ -68,13 +23,12 @@ class PersonAdmin(admin.ModelAdmin):
PeopleRangeInline
]
readonly_fields = ['id']
search_fields = ['title', 'first_name', 'last_name', 'organisation',
'position', 'country__short_name', 'contact_email']
search_fields = ['title', 'first_name', 'last_name', 'organisation', 'position', 'country__short_name', 'contact_email']
fieldsets = (
(None, {
'fields': (
('id', 'profile_on_web', 'news_letter'),
('mr_mrs', 'title', 'full_name', 'position'),
('mr_mrs', 'title','full_name', 'position'),
('first_name', 'last_name', 'search_name', 'status'),
('contact_email', 'email_2', 'skype', 'professional_phone'),
'organization',
@ -86,7 +40,7 @@ class PersonAdmin(admin.ModelAdmin):
('Research Scale', {
'classes': ('collapse',),
'fields': (('field_site', 'transect', 'mountain_top', 'mountain_range', 'landscape', 'regional', 'national',),
'_global'),
'_global'),
}),
('Methods and tools', {
'classes': ('collapse',),
@ -110,95 +64,10 @@ class PersonAdmin(admin.ModelAdmin):
}),
)
list_display = ['id', 'full_name', 'organization']
#autocomplete_fields = ['organization']
form = autocomplete_fields_form # adjust width of autocomplete_fields organization
autocomplete_fields = ['organization']
list_per_page = settings.ADMIN_LIST_PER_PAGE
ordering = ['full_name']
actions = [download_csv]
def get_field_queryset(self, db, db_field, request):
queryset = super().get_field_queryset(db, db_field, request)
if db_field.name == 'organization':
queryset = queryset.order_by(
'country', 'organisation_english', 'organisation_2', 'organisation_3', 'acronym')
return queryset
def get_actions(self, request):
actions = super().get_actions(request)
if 'delete_selected' in actions:
del actions['delete_selected']
return actions
def delete_model(self, request, obj):
self.delete_person(request, obj)
return super(PersonAdmin, self).delete_model(request, obj)
def delete_person(self, request, obj):
taxa_people = TaxaPeople.objects.filter(person=obj.id)
for i in taxa_people:
i.delete()
ranges_people = RangesPeople.objects.filter(person=obj.id)
for i in ranges_people:
i.delete()
resources_people = ResourcesPeople.objects.filter(person=obj.id)
for i in resources_people:
i.delete()
scales_people = ScalesPeople.objects.filter(person=obj.id)
for i in scales_people:
i.delete()
people_function = PeopleFunction.objects.filter(person=obj.id)
for i in people_function:
i.delete()
people_range = PeopleRange.objects.filter(person=obj.id)
for i in people_range:
i.delete()
people_resources = PeopleResource.objects.filter(person=obj.id)
for i in people_resources:
i.delete()
fields_people = FieldsPeople.objects.filter(person=obj.id)
for i in fields_people:
i.delete()
methods_people = MethodsPeople.objects.filter(person=obj.id)
for i in methods_people:
i.delete()
def delete_persons(self, request, obj):
for o in obj.all():
taxa_people = TaxaPeople.objects.filter(person=o.id)
for i in taxa_people:
i.delete()
ranges_people = RangesPeople.objects.filter(person=o.id)
for i in ranges_people:
i.delete()
resources_people = ResourcesPeople.objects.filter(person=o.id)
for i in resources_people:
i.delete()
scales_people = ScalesPeople.objects.filter(person=o.id)
for i in scales_people:
i.delete()
people_function = PeopleFunction.objects.filter(person=o.id)
for i in people_function:
i.delete()
people_range = PeopleRange.objects.filter(person=o.id)
for i in people_range:
i.delete()
people_resources = PeopleResource.objects.filter(person=o.id)
for i in people_resources:
i.delete()
fields_people = FieldsPeople.objects.filter(person=o.id)
for i in fields_people:
i.delete()
methods_people = MethodsPeople.objects.filter(person=o.id)
for i in methods_people:
i.delete()
o.delete()
messages.success(request, "Successfully deleted")
delete_persons.short_description = 'Delete Person & Related Fields'
actions = [download_csv, delete_persons]
# list_display_links = ['id']
class ResourceKeywordInline(admin.TabularInline):
@ -262,52 +131,6 @@ class ResourceAdmin(admin.ModelAdmin):
)
list_per_page = settings.ADMIN_LIST_PER_PAGE
def get_actions(self, request):
actions = super().get_actions(request)
if 'delete_selected' in actions:
del actions['delete_selected']
return actions
def delete_model(self, request, obj):
self.delete_resource(request, obj)
return super(ResourceAdmin, self).delete_model(request, obj)
def delete_resource(self, request, obj):
resource_keyword = ResourceKeyword.objects.filter(resource=obj.id)
for i in resource_keyword:
i.delete()
resource_range = ResourceRange.objects.filter(resource_title=obj.id)
for i in resource_range:
i.delete()
resource_people = ResourcesPeople.objects.filter(resource=obj.id)
for i in resource_people:
i.delete()
resource_people_resource = PeopleResource.objects.filter(
resource=obj.id)
for i in resource_people_resource:
i.delete()
def delete_resources(self, request, obj):
for o in obj.all():
resource_keyword = ResourceKeyword.objects.filter(resource=o.id)
for i in resource_keyword:
i.delete()
resource_range = ResourceRange.objects.filter(resource_title=o.id)
for i in resource_range:
i.delete()
resource_people = ResourcesPeople.objects.filter(resource=o.id)
for i in resource_people:
i.delete()
resource_people_resource = PeopleResource.objects.filter(
resource=o.id)
for i in resource_people_resource:
i.delete()
o.delete()
messages.success(request, "Successfully deleted")
delete_resources.short_description = 'Delete Resource & Related Fields'
actions = [download_csv, delete_resources]
class RangeNameTranslationInline(admin.TabularInline):
autocomplete_fields = ['language_translation']
@ -362,8 +185,6 @@ class RangeAdmin(admin.ModelAdmin):
ordering = ['range_name']
list_per_page = settings.ADMIN_LIST_PER_PAGE
actions = [download_csv]
class PeopleOrganizationInline(admin.TabularInline):
model = Person
@ -376,17 +197,15 @@ class OrganizationAdmin(admin.ModelAdmin):
PeopleOrganizationInline,
]
readonly_fields = ('org_num1',)
search_fields = ['organisation_search', 'org_alpha_search',
'organisation_2', 'organisation_3', 'subject', 'organisation_english']
list_display = ['org_num1', 'organisation_english',
'organisation_2', 'country']
search_fields = ['organisation_search', 'org_alpha_search', 'organisation_2', 'organisation_3', 'subject']
list_display = ['org_num1', 'organisation_english', 'organisation_2', 'country']
fieldsets = (
(None, {
'fields': (
'org_num1',
('acronym', 'category', 'subject'),
'country',
('organisation_english', 'tel', 'email', 'url',),
('organisation_english','tel', 'email', 'url',),
('organisation_2', 'organisation_3'),
'organisation_original',
)
@ -401,12 +220,11 @@ class OrganizationAdmin(admin.ModelAdmin):
('Other details', {
'classes': ('collapse',),
'fields': (
'tags',
),
'tags',
),
})
)
ordering = ['organisation_english']
actions = [download_csv]
def org_url(self, instance):
return format_html('<a href="{0}" target="_blank">{1}</a>',
@ -499,8 +317,7 @@ class SpeciesAdmin(admin.ModelAdmin):
class TaxonRangeAdmin(admin.ModelAdmin):
model = TaxonRange
search_fields = ['range__range_name', 'taxon',
'subrange_or_region', 'distribution', 'source', 'remarks']
search_fields = ['range__range_name', 'taxon', 'subrange_or_region', 'distribution', 'source', 'remarks']
list_display = ['range_name', 'taxon']
def range_name(self, obj):
@ -574,7 +391,6 @@ admin.site.register(Keyword, KeywordAdmin)
# admin.site.register(Scale)
# admin.site.register(Taxon)
# admin.site.register(Field, FieldAdmin)
admin.site.disable_action('delete_selected')
# LU models

View file

@ -39,7 +39,7 @@ def add_linked(person, obj, data):
tgt.name = n
tgt.save()
field.append(tgt)
return field
return field
# Fetch an object by source_id (numeric identifier used in source DB)
@ -71,8 +71,7 @@ def reindex_data():
# Data update routine
def refresh_data(filename, fmt=None, update_existing=False):
print("refresh_data")
def refresh_data(filename, fmt=None):
count = 0
rowcount = 0
if not isfile(filename):
@ -102,72 +101,42 @@ def refresh_data(filename, fmt=None, update_existing=False):
return None
if fmt['dataformat'] is DataFormat.PERSON_DETAIL:
print(row)
person, source_id = get_by_id(row['ID'], Person)
if not person:
person = Person.objects.filter(first_name=row['First name'], last_name=row['Last name']).first()
if person:
print("Fetched from DB")
else:
print("Does not exist in DB")
if not person:
person = Person(first_name=row['First name'], last_name=row['Last name'], source_id=row['ID'])
person.source_id = source_id
person.title = row['Title']
print(row)
person.organisation = row['Organisation English']
print("Country = %s" % row['country'] if 'country' in row else '')
if 'country' not in row or row['country'] is None or row['country'].strip() == '':
row['country'] = 0
c = Country.objects.get(id=row['country'])
person.country = c
person.position = row['Position']
person.biography = row['Biography']
person.contact_email = row['e-mail 1']
person.personal_url = fix_url(row['URL'])
person.save()
print("Created")
# Update data fields
if update_existing:
person.source_id = source_id
person.title = row['Title']
print(row)
person.organisation = row['Organisation English']
print("Country = %s" % row['country'] if 'country' in row else '')
if 'country' not in row or row['country'] is None or row['country'].strip() == '':
row['country'] = 0
c = Country.objects.get(id=row['country'])
person.country = c
person.position = row['Position']
person.biography = row['Biography']
person.contact_email = row['e-mail 1']
person.personal_url = fix_url(row['URL'])
person.save()
person.source_id = source_id
person.title = row['Title']
person.organisation = row['Organisation English']
print("Country = %s" % row['country'])
if row['country'] is None or row['country'].strip() == '':
row['country'] = 0
c = Country.objects.get(id=row['country'])
person.country = c
person.position = row['Position']
person.biography = row['Biography']
person.contact_email = row['e-mail 1']
person.personal_url = fix_url(row['URL'])
with transaction.atomic():
research_methods = add_linked(person, Method, row['Methods'])
methods_people = [MethodsPeople.objects.get_or_create(method_id=m.id, person_id=person.id)[0] for m in research_methods]
person.methodspeople_set.set(methods_people)
methods_people = [MethodsPeople.objects.get_or_create(method_id=m.id, person_id=person.id) for m in research_methods]
research_scales = add_linked(person, Scale, row['Scale'])
scales_people = [ScalesPeople.objects.get_or_create(scale_id=s.id, person_id=person.id)[0] for s in research_scales]
person.scalespeople_set.set(scales_people)
scales_people = [ScalesPeople.objects.get_or_create(scale_id=s.id, person_id=person.id) for s in research_scales]
research_taxa = add_linked(person, Taxon, row['Taxa'])
taxa_people = [TaxaPeople.objects.get_or_create(taxon_id=t.id, person_id=person.id)[0] for t in research_taxa]
person.taxapeople_set.set(taxa_people)
taxa_people = [TaxaPeople.objects.get_or_create(taxon_id=t.id, person_id=person.id) for t in research_taxa]
research_fields = add_linked(person, Field, row['Field of expertise'])
fields_people = [FieldsPeople.objects.get_or_create(field_id=f.id, person_id=person.id)[0] for f in research_fields]
person.fieldspeople_set.set(fields_people)
# research_ranges = add_linked(person, MountainRange, row['MountainRange'])
# ranges_people = [RangesPeople.objects.get_or_create(range_id=r.id, person_id=person.id)[0] for r in research_ranges]
# person.rangespeople_set.set(ranges_people)
fields_people = [FieldsPeople.objects.get_or_create(field_id=f.id, person_id=person.id) for f in research_fields]
person.index()
person.save()
count = count + 1
elif fmt['dataformat'] is DataFormat.RESOURCE_DETAIL:
res, source_id = get_by_id(row['ID'], Resource)
if not res:
res = Resource(source_id=source_id)
if not res: res = Resource(source_id=source_id)
res.title = row['Title']
res.citation = row['Citation']
res.url = fix_url(row['URL'].strip('#')) # remove weird #formatting#
@ -186,11 +155,9 @@ def refresh_data(filename, fmt=None, update_existing=False):
elif fmt['dataformat'] is DataFormat.PERSON_RESOURCE:
rzs, source_id = get_by_id(row['Resource'], Resource, first=False)
if not rzs or not rzs.first():
continue
if not rzs or not rzs.first(): continue
ppl, source_id = get_by_id(row['Person'], Person, first=False)
if not ppl or not ppl.first():
continue
if not ppl or not ppl.first(): continue
for person in ppl:
person.resources = []
for r in rzs:
@ -200,30 +167,15 @@ def refresh_data(filename, fmt=None, update_existing=False):
elif fmt['dataformat'] is DataFormat.PERSON_RANGE:
rzs, source_id = get_by_id(row['MountainRange'], MountainRange, first=False)
print(" range=%s, source_id=%s" % (rzs, source_id))
if not rzs or not rzs.first():
print(" --- No rzs, continue")
continue
ppl, source_id = get_by_id(row['Person'], Person, first=False)
print(" +++ ppl=%s, source_id=%s" % (ppl, source_id))
if not ppl or not ppl.first():
print(" --- No ppl, continue")
continue
with transaction.atomic():
person = ppl.first()
research_ranges = add_linked(person, MountainRange, row['MountainRange'])
ranges_people = [PeopleRange.objects.get_or_create(range_id=r.id, person_id=person.id)[0] for r in research_ranges]
person.peoplerange_set.set(ranges_people)
# for person in ppl:
# research_ranges = add_linked(person, MountainRange, row['MountainRange'])
# ranges_people = [RangesPeople.objects.get_or_create(range_id=r.id, person_id=person.id)[0] for r in research_ranges]
# person.rangespeople_set.set(ranges_people)
# ranges_people = RangesPeople
# for r in rzs:
# ranges_people.append(r)
# person.rangespeople_set.set(ranges_people)
if not ppl or not ppl.first(): continue
for person in ppl:
person.ranges = []
for r in rzs:
person.ranges.append(r)
person.save()
#print(" *** Saved %s => %s (%s)" % (person, ranges_people, len(ranges_people)))
count = count + 1
elif fmt['extension'] == 'geojson':

View file

@ -356,7 +356,7 @@ class Command(BaseCommand):
for k, v in self.csv_files_models_dict.items():
if v.strip().lower() == model_name.strip().lower():
csv_file_name = k
if csv_file_name == '':
if k == '':
raise Exception('Could not find a csv file name for model %s' % model_name)
if csv_folder_path.endswith('/'):
file_path = '%s%s' % (csv_folder_path, csv_file_name)

View file

@ -31,8 +31,7 @@ class Field(models.Model):
class FieldsPeople(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(
'Person', models.DO_NOTHING, blank=True, null=True)
person = models.ForeignKey('Person', models.DO_NOTHING, blank=True, null=True)
field = models.ForeignKey(Field, models.DO_NOTHING, blank=True, null=True)
class Meta:
@ -54,10 +53,8 @@ class Method(models.Model):
class MethodsPeople(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(
'Person', models.DO_NOTHING, blank=True, null=True)
method = models.ForeignKey(
Method, models.DO_NOTHING, blank=True, null=True)
person = models.ForeignKey('Person', models.DO_NOTHING, blank=True, null=True)
method = models.ForeignKey(Method, models.DO_NOTHING, blank=True, null=True)
class Meta:
db_table = 'methods_people'
@ -95,14 +92,10 @@ class MountainRange(models.Model):
#range_name_map = models.CharField(blank=True, null=True, unique=True, max_length=128)
range_name = models.CharField(blank=True, null=True, max_length=128)
range_name_ascii = models.CharField(blank=True, null=True, max_length=128)
range_name_language = models.ForeignKey(
Language, models.DO_NOTHING, blank=True, null=True, to_field='id')
mother_range = models.ForeignKey(
"self", models.DO_NOTHING, blank=True, null=True, to_field='id')
feature = models.ForeignKey(
RangeType, models.DO_NOTHING, blank=True, null=True, to_field='id')
map_unit = models.TextField(
blank=True, null=True, choices=MAP_UNIT_CHOICES)
range_name_language = models.ForeignKey(Language, models.DO_NOTHING, blank=True, null=True, to_field='id')
mother_range = models.ForeignKey("self", models.DO_NOTHING, blank=True, null=True, to_field='id')
feature = models.ForeignKey(RangeType, models.DO_NOTHING, blank=True, null=True, to_field='id')
map_unit = models.TextField(blank=True, null=True, choices=MAP_UNIT_CHOICES)
level = models.TextField(blank=True, null=True)
level_text = models.TextField(blank=True, null=True)
level_1 = models.TextField(blank=True, null=True)
@ -120,16 +113,14 @@ class MountainRange(models.Model):
comments = models.TextField(blank=True, null=True)
checked = models.BooleanField(default=False)
source = models.TextField(blank=True, null=True)
range_alternate_id = models.CharField(
blank=True, null=True, max_length=128)
range_alternate_id = models.CharField(blank=True, null=True, max_length=128)
geologic_region = models.TextField(blank=True, null=True)
gmba_v2_id = models.PositiveIntegerField(blank=True, null=True)
gmba_v2_id_str = models.TextField(blank=True, null=True)
wiki_data_id = models.CharField(blank=True, null=True, max_length=25)
wiki_data_url = models.URLField(blank=True, null=True)
select_300 = models.BooleanField(default=False)
gmba_narrow = models.BooleanField(
default=False, verbose_name="GMBA Standard")
gmba_narrow = models.BooleanField(default=False, verbose_name="GMBA Standard")
name_fr = models.CharField(blank=True, null=True, max_length=128)
name_de = models.CharField(blank=True, null=True, max_length=128)
name_es = models.CharField(blank=True, null=True, max_length=128)
@ -210,8 +201,7 @@ class Resource(models.Model):
PEGASuS_Check_map_with_author = models.BooleanField(default=False)
PEGASuS_polygon_ID = models.CharField(max_length=32, blank=True, null=True)
PEGASuS_Polygon_comments = models.TextField(blank=True, null=True)
PEGASuS_Assessment_ID = models.CharField(
max_length=32, blank=True, null=True)
PEGASuS_Assessment_ID = models.CharField(max_length=32, blank=True, null=True)
gloria = models.BooleanField(default=False)
gnomo = models.BooleanField(default=False)
lter = models.BooleanField(default=False)
@ -362,20 +352,15 @@ class GMBA_function(models.Model):
class Organisation(models.Model):
CATEGORY_CHOICES = (
('Independent', 'Independent'),
('Public administration > Research Institution',
'Public administration > Research Institution'),
('Public administration > Research Institution', 'Public administration > Research Institution'),
('Academia > University > Institute', 'Academia > University > Institute'),
('Academia > University', 'Academia > University'),
('Public administration > Other Agency',
'Public administration > Other Agency'),
('Public administration > Other Agency', 'Public administration > Other Agency'),
('Private > NGO (not for profit)', 'Private > NGO (not for profit)'),
('Academia > Academy of Sciences', 'Academia > Academy of Sciences'),
('Academia > Academy of Sciences > Institute',
'Academia > Academy of Sciences > Institute'),
('Public administration > Government',
'Public administration > Government'),
('Intergovernmental Agency > Research Institution',
'Intergovernmental Agency > Research Institution'),
('Academia > Academy of Sciences > Institute', 'Academia > Academy of Sciences > Institute'),
('Public administration > Government', 'Public administration > Government'),
('Intergovernmental Agency > Research Institution', 'Intergovernmental Agency > Research Institution'),
('Intergovernmental Agency', 'Intergovernmental Agency '),
('Private > Research Institution', 'Private > Research Institution'),
('Collection > Museum', 'Collection > Museum'),
@ -399,8 +384,7 @@ class Organisation(models.Model):
('Culture / arts', 'Culture / arts'),
('Geography', 'Geography'),
('Zoology', 'Zoology'),
('Development / poverty / human rights',
'Development / poverty / human rights'),
('Development / poverty / human rights', 'Development / poverty / human rights'),
('Social Sciences', 'Social Sciences'),
('Earth Sciences', 'Earth Sciences'),
('Health', 'Health'),
@ -415,12 +399,9 @@ class Organisation(models.Model):
org_num1 = models.AutoField(primary_key=True, verbose_name='ID')
organisation_search = models.TextField(blank=True, null=True)
org_alpha_search = models.TextField(blank=True, null=True)
organisation_english = models.CharField(
max_length=256, blank=True, null=True, verbose_name='Organisation')
organisation_2 = models.CharField(
max_length=256, blank=True, null=True, verbose_name='Department 1')
organisation_3 = models.CharField(
max_length=256, blank=True, null=True, verbose_name='Department 2')
organisation_english = models.CharField(max_length=256, blank=True, null=True, verbose_name='Organisation')
organisation_2 = models.CharField(max_length=256, blank=True, null=True, verbose_name='Department 1')
organisation_3 = models.CharField(max_length=256, blank=True, null=True, verbose_name='Department 2')
organisation_original = models.TextField(blank=True, null=True)
acronym = models.CharField(max_length=128, blank=True, null=True)
street = models.CharField(max_length=256, blank=True, null=True)
@ -433,33 +414,27 @@ class Organisation(models.Model):
url = models.URLField(blank=True, null=True)
tel = models.CharField(max_length=128, blank=True, null=True)
email = models.EmailField(blank=True, null=True)
country = models.ForeignKey(
Country, models.DO_NOTHING, blank=True, null=True, to_field='id')
country = models.ForeignKey(Country, models.DO_NOTHING, blank=True, null=True, to_field='id')
tags = models.TextField(blank=True, null=True)
description = models.TextField(blank=True, null=True)
northing = models.TextField(blank=True, null=True)
easting = models.TextField(blank=True, null=True)
category = models.TextField(
blank=True, null=True, choices=CATEGORY_CHOICES)
subject = models.CharField(
max_length=128, blank=True, null=True, choices=SUBJECT_CHOICES)
category = models.TextField(blank=True, null=True, choices=CATEGORY_CHOICES)
subject = models.CharField(max_length=128, blank=True, null=True, choices=SUBJECT_CHOICES)
def __str__(self):
if self.organisation_english:
if self.organisation_2:
name = f"{self.organisation_english} ({self.organisation_2})"
name = f"{self.country} < {self.organisation_english} < {self.organisation_2} < {self.organisation_3} < {self.acronym}"
else:
name = f"{self.organisation_english}"
name = f"{self.country} < {self.organisation_english} < {self.organisation_2} < {self.organisation_3} < {self.acronym}"
else:
name = ' ---'
name = '---'
return name
class RangeOnlineInfo(models.Model):
id = models.AutoField(primary_key=True)
# This is supposed to be linked to MountainRange via range_name_map, but the range_name_map
@ -476,10 +451,8 @@ class RangeOnlineInfo(models.Model):
class RangeNameTranslation(models.Model):
id = models.AutoField(primary_key=True)
range_name = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
language_translation = models.ForeignKey(
Language, models.DO_NOTHING, blank=True, null=True)
range_name = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
language_translation = models.ForeignKey(Language, models.DO_NOTHING, blank=True, null=True)
range_name_translation = models.TextField(blank=True, null=True)
def __str__(self):
@ -532,10 +505,8 @@ class Keyword(models.Model):
class ResourceKeyword(models.Model):
id = models.AutoField(primary_key=True)
resource = models.ForeignKey(
Resource, models.DO_NOTHING, blank=True, null=True)
keyword = models.ForeignKey(
Keyword, models.DO_NOTHING, blank=True, null=True, to_field='keyword_id')
resource = models.ForeignKey(Resource, models.DO_NOTHING, blank=True, null=True)
keyword = models.ForeignKey(Keyword, models.DO_NOTHING, blank=True, null=True, to_field='keyword_id')
def __str__(self):
return '%s - %s' % (self.resource.title, self.keyword.keyword)
@ -558,10 +529,8 @@ class NamesImport(models.Model):
class ResourceRange(models.Model):
id = models.AutoField(primary_key=True)
resource_title = models.ForeignKey(
Resource, models.DO_NOTHING, blank=True, null=True)
range_name = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
resource_title = models.ForeignKey(Resource, models.DO_NOTHING, blank=True, null=True)
range_name = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
def __str__(self):
return '%s, %s' % (self.resource_title.title, self.range_name.name)
@ -569,8 +538,7 @@ class ResourceRange(models.Model):
class LanguageLink(models.Model):
id = models.AutoField(primary_key=True)
language_number_code = models.ForeignKey(
Language, models.DO_NOTHING, blank=True, null=True)
language_number_code = models.ForeignKey(Language, models.DO_NOTHING, blank=True, null=True)
language_letter_code = models.TextField(blank=True, null=True)
def __str__(self):
@ -592,10 +560,8 @@ class Peak(models.Model):
class Search(models.Model):
id = models.AutoField(primary_key=True)
range_name = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
repository = models.ForeignKey(
Repository, models.DO_NOTHING, blank=True, null=True)
range_name = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
repository = models.ForeignKey(Repository, models.DO_NOTHING, blank=True, null=True)
search_string = models.TextField(blank=True, null=True)
search_date = models.TextField(blank=True, null=True)
result = models.TextField(blank=True, null=True)
@ -618,12 +584,12 @@ class Person(models.Model):
('''Involved scientist
Steering committee''', '''Involved scientist
Steering committee'''),
('Network', 'Network'),
('Network', 'Network'),
('Newsletter only', 'Newsletter only'),
('''Steering committee
Involved scientist''', '''Steering committee
Involved scientist''')
)
)
id = models.AutoField(primary_key=True)
source_id = models.IntegerField(blank=True, null=True)
title = models.CharField(blank=True, null=True, max_length=255)
@ -634,9 +600,7 @@ Involved scientist''')
contact_email = models.EmailField(blank=True, null=True) # email_1
personal_url = models.URLField(blank=True, null=True) # url ?
biography = models.TextField(blank=True, null=True)
# Field renamed because it started with '_'.
field_indexer = models.TextField(
db_column='_indexer', blank=True, null=True)
field_indexer = models.TextField(db_column='_indexer', blank=True, null=True) # Field renamed because it started with '_'.
mr_mrs = models.TextField(blank=True, null=True, choices=MR_MRS_CHOICES)
full_name = models.CharField(blank=True, null=True, max_length=100)
@ -647,16 +611,12 @@ Involved scientist''')
mobile_number = models.CharField(blank=True, null=True, max_length=50)
url = models.URLField(blank=True, null=True)
field_of_expertise = models.TextField(blank=True, null=True)
status = models.ForeignKey(
PeopleStatus, models.DO_NOTHING, blank=True, null=True, to_field='id')
status = models.ForeignKey(PeopleStatus, models.DO_NOTHING, blank=True, null=True, to_field='id')
entry_date = models.TextField(blank=True, null=True)
gmba_function = models.TextField(
blank=True, null=True, choices=GMBA_FUNCTION_CHOICES)
gmba_function = models.TextField(blank=True, null=True, choices=GMBA_FUNCTION_CHOICES)
news_letter = models.BooleanField(default=False)
country = models.ForeignKey(
Country, models.DO_NOTHING, blank=True, null=True, to_field='id')
organization = models.ForeignKey(
Organisation, models.DO_NOTHING, blank=True, null=True)
country = models.ForeignKey(Country, models.DO_NOTHING, blank=True, null=True, to_field='id')
organization = models.ForeignKey(Organisation, models.DO_NOTHING, blank=True, null=True)
birds = models.BooleanField(default=False)
mammals = models.BooleanField(default=False)
reptiles = models.BooleanField(default=False)
@ -681,8 +641,7 @@ Involved scientist''')
assessment = models.BooleanField(default=False)
meta_analysis = models.BooleanField(default=False)
synthesis = models.BooleanField(default=False)
# "Qualitative social science methods (interviews, surveys)"
qualitative_ssm = models.BooleanField(default=False)
qualitative_ssm = models.BooleanField(default=False) #"Qualitative social science methods (interviews, surveys)"
genetic_analyses = models.BooleanField(default=False)
field_site = models.BooleanField(default=False)
transect = models.BooleanField(default=False)
@ -707,18 +666,10 @@ Involved scientist''')
return False
def index(self):
if self:
self.field_indexer = " ".join([
self.first_name if self and self.first_name else "",
self.last_name if self and self.last_name else "",
self.organisation if self and self.organisation else "",
self.position if self and self.position else "",
self.biography if self and self.biography else ""
] if self else "")
# self.save()
return True
else:
return False
self.field_indexer = " ".join([
self.first_name, self.last_name, self.organisation, self.position, self.biography
])
return True
def fullname(self):
return " ".join([self.title if self.title else '',
@ -740,16 +691,11 @@ Involved scientist''')
'biography': self.biography or '',
}
def save(self, *args, **kwargs):
self.index()
super(Person, self).save(*args, **kwargs)
class TaxaPeople(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(Person, models.CASCADE, blank=True, null=True)
taxon = models.ForeignKey(
'Taxon', models.DO_NOTHING, blank=True, null=True)
taxon = models.ForeignKey('Taxon', models.DO_NOTHING, blank=True, null=True)
class Meta:
db_table = 'taxa_people'
@ -761,8 +707,7 @@ class TaxaPeople(models.Model):
class RangesPeople(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(Person, models.CASCADE, blank=True, null=True)
range = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
range = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
class Meta:
db_table = 'ranges_people'
@ -774,8 +719,7 @@ class RangesPeople(models.Model):
class ResourcesPeople(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(Person, models.CASCADE, blank=True, null=True)
resource = models.ForeignKey(
Resource, models.CASCADE, blank=True, null=True)
resource = models.ForeignKey(Resource, models.CASCADE, blank=True, null=True)
class Meta:
db_table = 'resources_people'
@ -786,8 +730,7 @@ class ResourcesPeople(models.Model):
class ScalesPeople(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(
Person, models.DO_NOTHING, blank=True, null=True)
person = models.ForeignKey(Person, models.DO_NOTHING, blank=True, null=True)
scale = models.ForeignKey(Scale, models.DO_NOTHING, blank=True, null=True)
class Meta:
@ -811,8 +754,7 @@ class Species(models.Model):
class PeopleFunction(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(Person, models.CASCADE, blank=True, null=True)
function = models.ForeignKey(
GMBA_function, models.DO_NOTHING, blank=True, null=True)
function = models.ForeignKey(GMBA_function, models.DO_NOTHING, blank=True, null=True)
def __str__(self):
return self.person.full_name
@ -820,10 +762,8 @@ class PeopleFunction(models.Model):
class SpeciesRange(models.Model):
id = models.AutoField(primary_key=True)
scientific_name = models.ForeignKey(
Species, models.DO_NOTHING, blank=True, null=True)
range = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
scientific_name = models.ForeignKey(Species, models.DO_NOTHING, blank=True, null=True)
range = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
endemic = models.TextField(blank=True, null=True)
source_url = models.TextField(blank=True, null=True)
@ -834,8 +774,7 @@ class SpeciesRange(models.Model):
class PeopleRange(models.Model):
id = models.AutoField(primary_key=True)
person = models.ForeignKey(Person, models.CASCADE, blank=True, null=True)
range = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
range = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
def __str__(self):
return str(self.id)
@ -843,8 +782,7 @@ class PeopleRange(models.Model):
class TaxonRange(models.Model):
id = models.AutoField(primary_key=True)
range = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
range = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
taxon = models.TextField(blank=True, null=True)
subrange_or_region = models.TextField(blank=True, null=True)
taxon_status = models.TextField(blank=True, null=True)
@ -875,8 +813,7 @@ class PeopleResource(models.Model):
)
id = models.AutoField(primary_key=True)
person = models.ForeignKey(Person, models.CASCADE, blank=True, null=True)
resource = models.ForeignKey(
Resource, models.DO_NOTHING, blank=True, null=True)
resource = models.ForeignKey(Resource, models.DO_NOTHING, blank=True, null=True)
role = models.TextField(blank=True, null=True, choices=ROLES_CHOICES)
def __str__(self):
@ -885,10 +822,8 @@ class PeopleResource(models.Model):
class RangeCountry(models.Model):
id = models.AutoField(primary_key=True)
range = models.ForeignKey(
MountainRange, models.DO_NOTHING, blank=True, null=True)
country = models.ForeignKey(
Country, models.DO_NOTHING, blank=True, null=True)
range = models.ForeignKey(MountainRange, models.DO_NOTHING, blank=True, null=True)
country = models.ForeignKey(Country, models.DO_NOTHING, blank=True, null=True)
def __str__(self):
return '%s --- %s' % (self.range.range_name if self.range else 'None', self.country.short_name if self.country else 'None')

View file

@ -248,7 +248,7 @@
</div><!-- /person-tags -->
<a name="contact"></a><h3>Contact</h3>
<form onsubmit="{ FormSubmitted }" action="https://formspree.io/f/xvolqjpe"
<form action="https://formspree.io/&#103;&#109;&#098;&#097;&#064;&#105;&#112;&#115;&#046;&#117;&#110;&#105;&#098;&#101;&#046;&#099;&#104;"
target="_blank" method="POST" class="contact-form">
<input type="hidden" name="subject" value="Contact request from GMBA Connect">
<input type="hidden" name="person" value={ person.data.fullname }>
@ -256,7 +256,7 @@
<input type="text" name="name" placeholder="Your name" required>
<input type="email" name="_replyto" placeholder="E-mail address" required>
<p>
<input type="submit" value="Send" class="c-button u-small c-button--brand">
<input type="submit" value="Send" class="c-button u-small c-button--brand">
</p>
</form>
@ -287,12 +287,6 @@
const FILTER_BLANK = {
'country': [], 'range': [], 'field': [], 'taxon': []
}
FormSubmitted(){
console.log("i got executed")
var self = this
self.closedetails()
}
this.filters_shown = FILTER_BLANK
search(e, nextpage) {
@ -487,9 +481,6 @@
}
})
</script>
</gmba-search>

View file

@ -9,8 +9,6 @@
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<meta name="description" content="">
<meta name="author" content="">
<meta name="referrer" content="origin">
<link href="{% static 'app/admin/bootstrap/bootstrap3/swatch/default/bootstrap.min.css' %}?v=3.3.5" rel="stylesheet">

View file

@ -6,8 +6,6 @@
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="referrer" content="origin">
<!--[if lte IE 8]><script src="/static/assets/js/ie/html5shiv.js"></script><![endif]-->
<!--[if lte IE 8]><link rel="stylesheet" href="/static/assets/css/ie8.css" /><![endif]-->

View file

@ -5,8 +5,6 @@
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1" />
<meta name="referrer" content="origin">
<!--[if lte IE 8]><script src="{% static 'app/assets/js/ie/html5shiv.js' %}"></script><![endif]-->
<!--[if lte IE 8]><link rel="stylesheet" href="{% static 'app/assets/ss/ie8.css' %}" /><![endif]-->

View file

@ -176,17 +176,11 @@ def get_paginated(query_set, page, per_page):
for p in paginator.object_list:
filters['country'].append(p.country.short_name)
for r in p.peoplerange_set.all():
if r.range and r.range.range_name:
filters['range'].append(r.range.range_name)
else:
print("r.range.range_name is None %s %s" % (r.range_id, r.person_id))
filters['range'].append(r.range.range_name)
for r in p.fieldspeople_set.all():
filters['field'].append(r.field.name)
for r in p.taxapeople_set.all():
if r and r.taxon and r.taxon.name:
filters['taxon'].append(r.taxon.name)
else:
print("r.taxon.name is None %s %s" % (r.range_id, r.taxon))
filters['taxon'].append(r.taxon.name)
filters = {
'country': sorted(set(filters['country'])),
'range': sorted(set(filters['range'])),
@ -213,10 +207,10 @@ class SearchView(View):
per_page = int(self.request.GET.get('per_page', 10))
q = self.request.GET.get('q', '').strip()
if not q or len(q) < 3:
query_set = Person.objects.filter(profile_on_web=True).all()
query_set = Person.objects.all()
else:
query = reduce(operator.or_, (Q(field_indexer__icontains=item) for item in q.split(" ")))
query_set = Person.objects.filter(query).filter(profile_on_web=True)
query_set = Person.objects.filter(query)
q_country = self.request.GET.get('country', '')
q_range = self.request.GET.get('range', '')
@ -225,7 +219,7 @@ class SearchView(View):
if len(q_country) > 2:
query_set = query_set.filter(country__short_name__icontains=q_country.strip().lower())
if len(q_range) > 2:
ranges_people = PeopleRange.objects.filter(range__range_name__icontains=q_range.strip().lower())
ranges_people = PeopleRange.objects.filter(range__name__icontains=q_range.strip().lower())
r_people_ids = [rp.person_id for rp in ranges_people]
query_set = query_set.filter(id__in=r_people_ids)
if len(q_field) > 2:
@ -245,8 +239,8 @@ class PeopleDetailView(View):
person = get_object_or_404(Person, id=people_id)
return_data = {
'data': person.dict(),
'resources': [r.resource.dict() for r in person.peopleresource_set.all()],
'ranges': [r.range.dict() for r in person.peoplerange_set.all()],
'resources': [r.resource.dict() for r in person.resourcespeople_set.all()],
'ranges': [r.range.dict() for r in person.rangespeople_set.all()],
'fields': [r.field.name for r in person.fieldspeople_set.all()],
'methods': [r.method.name for r in person.methodspeople_set.all()],
'scales': [r.scale.name for r in person.scalespeople_set.all()],

View file

@ -1,37 +0,0 @@
version: '3.8'
services:
web:
build:
context: ./
dockerfile: Dockerfile.prod
command: gunicorn gmba_django.wsgi:application --bind [::]:8000
volumes:
- static_volume:/data/app/app/static
- media_volume:/data/app/app/media
expose:
- 8000
env_file:
- ./.env.prod
depends_on:
- db
db:
image: postgres:13.0-alpine
volumes:
- postgres_data:/data/var/lib/postgresql/data/
env_file:
- ./.env.prod
nginx:
build: ./nginx
volumes:
- static_volume:/data/app/app/static
- media_volume:/data/app/app/media
ports:
- 1337:80
depends_on:
- web
volumes:
postgres_data:
static_volume:
media_volume:

View file

@ -1,15 +0,0 @@
#!/bin/sh
if [ "$DATABASE" = "postgres" ]
then
echo "Waiting for postgres..."
while ! nc -z $SQL_HOST $SQL_PORT; do
sleep 0.1
done
echo "PostgreSQL started"
fi
exec "$@"

View file

@ -4,11 +4,7 @@ DEBUG = True
DATABASES = {
'default': {
'ENGINE': os.environ.get('SQL_ENGINE', 'django.db.backends.postgresql'),
'NAME': os.environ.get('POSTGRES_DB', 'app'),
'USER': os.environ.get('POSTGRES_USER', 'app'),
'PASSWORD': os.environ.get('POSTGRES_PASSWORD', ''),
'HOST': os.environ.get('POSTGRES_HOST', 'localhost'),
'PORT': os.environ.get('POSTGRES_PORT', 5432),
'ENGINE': 'django.db.backends.sqlite3',
'NAME': os.path.join(BASE_DIR, 'db.sqlite3'),
}
}

View file

@ -6,20 +6,17 @@ ALLOWED_HOSTS = os.environ.get('ALLOWED_HOSTS', "").split(",")
DATABASES = {
'default': {
'ENGINE': os.environ.get('SQL_ENGINE', 'django.db.backends.postgresql'),
'NAME': os.environ.get('POSTGRES_DB', 'app'),
'USER': os.environ.get('POSTGRES_USER', 'app'),
'PASSWORD': os.environ.get('POSTGRES_PASSWORD', ''),
'HOST': os.environ.get('POSTGRES_HOST', 'localhost'),
'PORT': os.environ.get('POSTGRES_PORT', 5432),
'ENGINE': os.environ.get('SQL_ENGINE', 'django.db.backends.sqlite3'),
'NAME': os.environ.get('SQL_DATABASE', os.path.join(BASE_DIR, 'db.sqlite3')),
# 'USER': os.environ.get('SQL_USER', 'user'),
# 'PASSWORD': os.environ.get('SQL_PASSWORD', 'password'),
# 'HOST': os.environ.get('SQL_HOST', 'localhost'),
# 'PORT': os.environ.get('SQL_PORT', ''),
}
}
SECURE_SSL_REDIRECT = True
# See https://docs.djangoproject.com/en/2.2/ref/settings/#secure-proxy-ssl-header
SECURE_PROXY_SSL_HEADER = ('HTTP_X_FORWARDED_PROTO', 'https')
SESSION_COOKIE_SECURE = True
CSRF_COOKIE_SECURE = True

View file

@ -1,6 +0,0 @@
#!/bin/ash
#python manage.py migrate
python manage.py collectstatic --noinput
#
#gunicorn gmba_django.wsgi:application --bind [::]:8000

View file

@ -1,4 +0,0 @@
FROM nginx:1.21-alpine
RUN rm /etc/nginx/conf.d/default.conf
COPY nginx.conf /etc/nginx/conf.d

View file

@ -1,28 +0,0 @@
upstream gmba_django {
server web:8000;
}
server {
listen 80;
client_max_body_size 256m;
location / {
proxy_pass http://gmba_django;
proxy_set_header X-Forwarded-For $proxy_add_x_forwarded_for;
proxy_set_header Host $host;
proxy_redirect off;
}
location /static/ {
alias /home/app/app/static/;
expires max;
}
location /media/ {
alias /home/app/app/media/;
expires max;
}
add_header Content-Security-Policy "frame-ancestors https://www.gmba.unibe.ch";
}

View file

@ -6,4 +6,3 @@ sqlparse==0.4.1
typing-extensions==3.10.0.0
psycopg2==2.9.1
Werkzeug==2.0.2
gunicorn==20.1.0